This is for obtaining 3D ventricular surface.
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First, run loadminc.m file. 

loadminc('test.mnc') <-- 'test.mnc' was obtained from brainweb.

Then, the return answer should be stored as 'V.mat'. 

With V.mat, we should run image_denoising.m file. 
This file contains two main parts: saving MRI into 2D slices and segmenting 2D slices. 

Now, run 3D_reconstruction.m
Then, we will get the hydrocephalus.poly file. 
Open the file with Meshlab software so that you could make the mesh valid. 
By using Tetgen, you will get the 3D volume mesh for hydrocephalus. 


To use image files other than the ones provided, place them in this directory.
For more information about this project, see the project webpage at:
https://people.eecs.ku.edu/~shontz/nsf_career_project.html



